> For the complete documentation index, see [llms.txt](https://docs.system.com/system/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.system.com/system/how-system-works.md).

# HOW SYSTEM WORKS

- [System Platform](https://docs.system.com/system/how-system-works/system-platform.md)
- [What types of data do we collect?](https://docs.system.com/system/how-system-works/system-platform/what-types-of-data-do-we-collect.md)
- [Where does our data come from?](https://docs.system.com/system/how-system-works/system-platform/where-does-our-data-come-from.md)
- [How do we extract and link relationships from scientific research?](https://docs.system.com/system/how-system-works/system-platform/how-do-we-extract-and-link-relationships-from-scientific-research.md)
- [How do we ensure and measure accuracy?](https://docs.system.com/system/how-system-works/system-platform/how-do-we-ensure-and-measure-accuracy.md)
- [Which statistical measures do we extract from scientific literature?](https://docs.system.com/system/how-system-works/system-platform/which-statistical-measures-do-we-extract-from-scientific-literature.md)
- [Which mechanistic relationship types do we extract/ingest from scientific literature and databases?](https://docs.system.com/system/how-system-works/system-platform/which-mechanistic-relationship-types-do-we-extract-ingest-from-scientific-literature-and-databases.md)


---

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Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

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